It is a resident of the lower levels of damp tropical forests, and prefers the deep shade of the understory. Their broad bills and weak legs reflect their diet and arboreal habits. Although their flight is fast, they are reluctant to fly any distance. They typically perch upright and motionless.
Black-throated trogons feed mainly on arthropods as well as some fruit, often taken in flight; they are one of the most insectivorous trogon species of their range. They opportunistically catch arthropods that have been startled by other predators, such as coatis (Nasua spp.).
The black-throated trogon nests 1–6 m (3.3–19.7 ft) high in an unlined shallow cavity, with a typical clutch of two white eggs.